publications

2024

1. Intraspecific diversity in thermal performance determines phytoplankton ecological niche

   Arianna Isabella Krinos, Sara K Shapiro, Weixuan Li, and 5 more authors

   bioRxiv, 2024
2. Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake

   Arianna I Krinos, Robert M Bowers, Robin R Rohwer, and 3 more authors

   Microbiome, 2024
3. Microeukaryote metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling

   Natalie R Cohen, Arianna I Krinos, Riss M Kell, and 8 more authors

   Nature Communications, 2024
4. Protistan community composition and metabolism in the North Pacific Subtropical Gyre: Influences of mesoscale eddies and depth

   Samantha J Gleich, Sarah K Hu, Arianna I Krinos, and 1 more author

   Environmental Microbiology, 2024

2023

1. Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly

   Arianna I Krinos, Natalie R Cohen, Michael J Follows, and 1 more author

   BMC bioinformatics, 2023
2. Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

   Harriet Alexander, Sarah K Hu, Arianna I Krinos, and 4 more authors

   mBio, 2023
3. Missing microbial eukaryotes and misleading meta-omic conclusions

   Arianna I Krinos, Margaret Mars Brisbin, Sarah K Hu, and 5 more authors

   bioRxiv, 2023
4. Vitamin B12 conveys a protective advantage to phycosphere-associated bacteria at high temperatures

   Margaret Mars Brisbin, Alese Schofield, Matthew R McIlvin, and 3 more authors

   ISME communications, 2023

2022

1. Marine microeukaryote metatranscriptomics: sample processing and bioinformatic workflow recommendations for ecological applications

   Natalie R Cohen, Harriet Alexander, Arianna I Krinos, and 2 more authors

   Frontiers in Marine Science, 2022

2021

1. EUKulele: Taxonomic annotation of the unsung eukaryotic microbes

   Arianna I Krinos, Sarah K Hu, Natalie R Cohen, and 1 more author

   Journal of Open Source Software, 2021
2. Seasonal changes and the unexpected impact of environmental disturbance on skin bacteria of individual amphibians in a natural habitat

   Jenifer B Walke, Matthew H Becker, Arianna Krinos, and 5 more authors

   FEMS Microbiology Ecology, 2021
3. Estimating the maximal growth rates of eukaryotic microbes from cultures and metagenomes via codon usage patterns

   Jake L Weissman, Edward-Robert O Dimbo, Arianna I Krinos, and 8 more authors

   bioRxiv, 2021
4. The Bioinformatics Virtual Coordination Network: An open-source and interactive learning environment

   Benjamin J Tully, Joy Buongiorno, Ashley B Cohen, and 8 more authors

   In Frontiers in Education , 2021

2020

1. Ecosystem-scale nutrient cycling responses to increasing air temperatures vary with lake trophic state

   Kaitlin J Farrell, Nicole K Ward, Arianna I Krinos, and 4 more authors

   Ecological Modelling, 2020

2019

1. Enhancing collaboration between ecologists and computer scientists: lessons learned and recommendations forward

   Cayelan C Carey, Nicole K Ward, Kaitlin J Farrell, and 8 more authors

   Ecosphere, 2019
2. Parameter and uncertainty estimation for a model of atmospheric CO_2 observations

   ARIANNA Krinos, and AIMEE Maurais

   SIAM Undergraduate Research Online, 2019
3. Including variability in air temperature warming scenarios in a lake simulation model highlights uncertainty in predictions of cyanobacteria

   Arianna I Krinos, Kaitlin J Farrell, Vahid Daneshmand, and 3 more authors

   bioRxiv, 2019
4. Nuggets of Wisdom from Destinations Doomed Due to Dragon Dominion.

   Arianna Krinos, and Aimee Maurais

   UMAP Journal, 2019

2018

1. Better to Marry Renewables than to Burn Fossil Fuels in Border States.

   Aimee Maurais, and Arianna Krinos

   UMAP Journal, 2018
2. Ocean acidification: effects of pH on 45 Ca uptake by lobster branchiostegites

   Lilian Nagle, Skye Brown, Arianna Krinos, and 1 more author

   Journal of Comparative Physiology B, 2018